STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61336.1Competence protein ComEA. (364 aa)    
Predicted Functional Partners:
SCL61331.1
Competence protein ComEC.
 
  
 0.964
SCL61329.1
DNA polymerase III, delta subunit.
       0.688
SCL61326.1
Hypothetical protein.
       0.638
SCL66110.1
Transcriptional attenuator, LytR family; Partial gene; manually curated.
 
     0.606
SCL45812.1
Transcriptional attenuator, LytR family.
 
     0.602
SCL45898.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Manually curated.
   
  
 0.559
SCL46828.1
Leader peptidase (prepilin peptidase) / N-methyltransferase; Belongs to the peptidase A24 family.
   
  
 0.559
SCL48511.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
   
  
 0.559
SCL50452.1
Transcriptional attenuator, LytR family.
 
     0.543
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.502
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.