STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61396.1Ribonuclease E. (1103 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.983
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
    
 
 0.950
SCL59122.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
   
 
 0.942
SCL51438.1
Hypothetical protein; Belongs to the UPF0109 family.
  
 
   0.922
SCL46054.1
spoIIIJ-associated protein.
   
   0.916
SCL47055.1
Superfamily II DNA and RNA helicase.
    
 
 0.848
SCL56486.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
 
 0.848
SCL62697.1
Superfamily II DNA and RNA helicase.
    
 
 0.848
SCL63689.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
    
 
 0.848
SCL51450.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.804
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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