STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61740.1Hypothetical protein. (406 aa)    
Predicted Functional Partners:
SCL61746.1
Two component transcriptional regulator, LuxR family.
 
   0.937
SCL61744.1
Hypothetical protein.
     0.870
SCL46951.1
Signal transduction histidine kinase.
  
 0.802
SCL46188.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
   0.791
SCL65709.1
Two component transcriptional regulator, LuxR family.
  
   0.787
SCL57343.1
Two-component system, NarL family, response regulator DesR.
  
   0.747
SCL53609.1
Two component transcriptional regulator, LuxR family.
  
   0.739
SCL65730.1
Two component transcriptional regulator, LuxR family.
  
   0.738
SCL47957.1
Two component transcriptional regulator, LuxR family.
  
   0.735
SCL46115.1
Two component transcriptional regulator, LuxR family.
  
   0.733
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.