STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL61804.1Cell wall-associated hydrolase, NlpC family. (324 aa)    
Predicted Functional Partners:
SCL46951.1
Signal transduction histidine kinase.
    
 0.793
SCL63790.1
HAMP domain-containing protein.
  
 
 0.729
SCL46031.1
N-acetylmuramoyl-L-alanine amidase; Manually curated.
  
  
 0.602
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.587
SCL51480.1
Hypothetical protein.
  
  
 0.576
SCL50070.1
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.554
SCL46368.1
Cell wall-associated hydrolase, NlpC family.
 
  
0.478
SCL47059.1
Hypothetical protein.
   
  
 0.447
SCL49902.1
Hypothetical protein.
   
  
 0.447
SCL52137.1
Hypothetical protein; Manually curated.
   
  
 0.447
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.