STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulokinase. (481 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.994
SCL55537.1
L-ribulokinase; Belongs to the ribulokinase family.
 
 
 0.816
SCL55541.1
L-ribulose 5-phosphate 4-epimerase.
 
 
 0.803
SCL53898.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.777
SCL48920.1
Sugar (pentulose or hexulose) kinase.
 
  
  0.745
SCL52698.1
Xylulokinase.
 
  
 
0.730
SCL61866.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
  
 0.726
SCL56462.1
L-fuculose-phosphate aldolase.
  
 
 0.723
SCL58624.1
Gluconokinase.
 
  
  0.713
SCL46073.1
6-phosphogluconate dehydrogenase.
  
 
 0.697
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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