STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (395 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.994
SCL48917.1
Xylulokinase.
 
 
 0.974
SCL52698.1
Xylulokinase.
  
 
 0.943
SCL60632.1
Xylitol oxidase.
 
  
  0.875
SCL58923.1
Fructokinase.
     
 0.866
SCL59798.1
Glucokinase.
    
 0.863
SCL64401.1
Glucokinase.
    
 0.863
SCL48044.1
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
     
 0.861
SCL61866.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
 
  
 0.841
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
   
 0.790
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.