STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62202.1Winged helix-turn helix; Manually curated. (230 aa)    
Predicted Functional Partners:
SCL47909.1
Putative transposase.
    
   0.905
SCL49902.1
Hypothetical protein.
 
     0.768
SCL57162.1
Arylsulfatase A.
  
    0.763
SCL46443.1
Hypothetical protein.
  
     0.751
SCL50029.1
Sporulation and spore germination.
  
     0.739
SCL46685.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.728
SCL50285.1
Hypothetical protein.
  
     0.711
SCL47121.1
Hypothetical protein.
  
     0.704
SCL57098.1
Hypothetical protein.
  
     0.704
SCL60013.1
Hypothetical protein.
  
     0.704
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
Server load: low (32%) [HD]