STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62215.1Helix-turn-helix domain-containing protein. (105 aa)    
Predicted Functional Partners:
SCL62211.1
Phage derived protein Gp49-like.
   
 0.944
SCL53929.1
Hypothetical protein.
   
 0.761
SCL62206.1
Arsenite efflux pump ArsB, ACR3 family.
       0.668
SCL62207.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
       0.668
SCL53281.1
Hypothetical protein.
  
     0.589
SCL49226.1
Hypothetical protein.
  
     0.582
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.581
SCL58304.1
Transcriptional regulator, TetR family.
  
    0.505
SCL52102.1
Hypothetical protein.
  
     0.489
SCL66005.1
UTRA domain-containing protein.
  
    0.459
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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