STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62221.1RHS repeat-associated core domain-containing protein. (2944 aa)    
Predicted Functional Partners:
SCL48587.1
Hypothetical protein.
  
     0.657
SCL54671.1
ABC-2 type transport system permease protein.
  
     0.561
SCL50690.1
Protein kinase domain-containing protein.
  
    0.551
SCL64078.1
Serine protease, subtilisin family.
  
    0.525
SCL55177.1
1-phosphofructokinase.
  
     0.522
SCL55960.1
Aminoglycoside 2''-phosphotransferase.
  
     0.498
SCL54720.1
Hypothetical protein.
  
     0.473
SCL48108.1
Type VII secretion integral membrane protein EccD.
  
    0.472
SCL49913.1
Hypothetical protein.
   
 
 0.469
SCL49940.1
Hypothetical protein.
   
 
 0.469
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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