STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62327.1Polar amino acid transport system permease protein. (217 aa)    
Predicted Functional Partners:
SCL62332.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 0.998
SCL62317.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  0.996
SCL62322.1
Amino acid ABC transporter membrane protein 1, PAAT family (TC 3.A.1.3.-).
 
  
 
0.981
SCL51913.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 0.974
SCL53940.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 0.974
SCL65057.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  0.859
SCL51910.1
Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.
 
  0.833
SCL53947.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
  0.640
accA
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
   
   0.621
SCL53945.1
Amino acid ABC transporter membrane protein, PAAT family.
 
  
 
0.561
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.