STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62451.1Nickel-type superoxide dismutase maturation protease. (116 aa)    
Predicted Functional Partners:
SCL62456.1
Nickel superoxide dismutase.
 
   
 0.915
SCL61076.1
Hypothetical protein.
  
 
   0.747
SCL51450.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
 
  0.736
SCL62448.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
       0.646
SCL55966.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
  
     0.625
SCL65959.1
PH domain-containing protein.
  
     0.570
SCL62459.1
Serine/threonine-protein kinase RsbW.
 
     0.515
SCL59531.1
Hypothetical protein.
  
     0.511
SCL64333.1
ABC-2 type transport system ATP-binding protein.
  
     0.511
SCL51453.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
 
  0.485
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.