STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62656.1Protein of unknown function. (74 aa)    
Predicted Functional Partners:
SCL62648.1
Helix-turn-helix domain-containing protein.
 
     0.702
SCL64759.1
Protein of unknown function.
  
     0.701
SCL50720.1
Hypothetical protein.
  
     0.638
SCL51131.1
Protein of unknown function.
  
     0.620
SCL51291.1
Protein of unknown function.
  
     0.620
SCL51558.1
Protein of unknown function.
  
     0.595
SCL64871.1
SAM-dependent methyltransferase, MidA family; Manually curated.
  
     0.584
SCL49044.1
Hypothetical protein.
  
     0.563
SCL63512.1
Protein phosphatase 2C.
  
     0.559
SCL53285.1
Protein of unknown function.
  
     0.550
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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