STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62679.1Predicted Zn-dependent peptidase. (430 aa)    
Predicted Functional Partners:
SCL62677.1
Predicted Zn-dependent peptidase.
     0.997
SCL61768.1
Predicted Zn-dependent peptidase.
     0.975
SCL59871.1
Menaquinol-cytochrome c reductase cytochrome b subunit precursor.
    
 0.974
SCL52894.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
   
 0.968
SCL59874.1
Menaquinol-cytochrome c reductase iron-sulfur subunit precursor.
   
 0.968
SCL47229.1
NADH dehydrogenase subunit G.
   
 
 0.952
SCL47222.1
NADH dehydrogenase subunit E.
   
   0.949
SCL56060.1
Thioesterase domain-containing protein.
   
  0.930
SCL48058.1
Amino acid adenylation domain-containing protein/natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
  0.929
SCL56026.1
Phosphopantetheine attachment site.
  
  0.929
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.