STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62732.1Subtilase family protein; Belongs to the peptidase S8 family. (1118 aa)    
Predicted Functional Partners:
SCL58086.1
Alpha-tubulin suppressor.
   
 0.611
SCL65437.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
   0.528
SCL62737.1
Maltose O-acetyltransferase.
       0.514
SCL65431.1
Hypothetical protein.
  
   0.496
SCL49659.1
Chitobiase/beta-hexosaminidase C-terminal domain-containing protein.
  
   0.483
SCL46205.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
 
 0.477
SCL61609.1
Cytochrome oxidase assembly protein ShyY1.
    
   0.476
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.476
SCL57770.1
Type VII secretion protein EccB.
  
   0.471
SCL51550.1
RHS repeat-associated core domain-containing protein.
  
    0.456
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.