STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62843.1Regulatory protein, gntR family. (136 aa)    
Predicted Functional Partners:
SCL48914.1
Transcriptional regulator, GntR family.
  
     0.756
SCL58791.1
Transcriptional regulator, GntR family.
  
     0.688
SCL56940.1
Transcriptional regulator, GntR family.
  
     0.643
SCL59223.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
    0.606
SCL63739.1
Regulatory protein, gntR family.
  
     0.599
SCL58672.1
Regulatory protein, gntR family.
  
    0.538
SCL50761.1
Regulatory protein, gntR family.
  
     0.465
SCL62833.1
Hypothetical protein.
       0.440
SCL62837.1
Hypothetical protein.
       0.440
SCL62841.1
DivIVA domain-containing protein.
       0.440
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.