STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL62969.1Peptidase family M23. (238 aa)    
Predicted Functional Partners:
SCL52691.1
Peptidase family M23.
  
     0.716
SCL61604.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.661
SCL65105.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.644
SCL45973.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.608
SCL58840.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.607
SCL62116.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.590
SCL62975.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
 
    
0.531
SCL46343.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
  
     0.507
SCL51450.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
    0.477
SCL59856.1
GTP pyrophosphokinase.
  
     0.460
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.