STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL63229.1Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Manually curated; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (715 aa)    
Predicted Functional Partners:
SCL63233.1
Assimilatory nitrate reductase (NADH) beta subunit.
 
 0.999
SCL63235.1
Assimilatory nitrite reductase (NAD(P)H) large subunit precursor; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.993
SCL63239.1
Assimilatory nitrite reductase (NAD(P)H) small subunit.
 
  
 0.989
SCL47222.1
NADH dehydrogenase subunit E.
  
 0.984
SCL47225.1
NADH dehydrogenase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 0.980
SCL63214.1
MFS transporter, NNP family, nitrate/nitrite transporter.
 
 
 0.965
SCL60529.1
NADH:ubiquinone oxidoreductase, NADH-binding subunit (chain F).
  
 0.959
SCL56357.1
Formate dehydrogenase beta subunit.
 
 
 0.931
SCL63243.1
uroporphyrinogen-III synthase.
 
   
 0.889
SCL48984.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.869
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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