STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL63276.1Probable F420-dependent oxidoreductase, Rv1855c family. (316 aa)    
Predicted Functional Partners:
SCL63273.1
NitT/TauT family transport system ATP-binding protein.
 
 
  0.852
SCL56060.1
Thioesterase domain-containing protein.
   
 0.840
SCL65529.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.823
SCL63279.1
Hypothetical protein.
       0.785
SCL49934.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
  
 0.738
SCL54629.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.733
SCL59338.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
   
 0.729
SCL56966.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
     0.708
SCL51640.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
  
     0.706
SCL56057.1
Phosphopantetheine attachment site.
   
 0.673
Your Current Organism:
Micromonospora yangpuensis
NCBI taxonomy Id: 683228
Other names: CGMCC 4.5736, DSM 45577, M. yangpuensis, Micromonospora sp. FXJ6.011, Micromonospora yangpuensis Zhang et al. 2012, NBRC 107727, strain FXJ6.011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.