STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAA23605.1PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (652 aa)    
Predicted Functional Partners:
OAA23604.1
Hypothetical protein.
       0.773
OAA22284.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase; PFAM: Domain of unknown function; 4Fe-4S dicluster domain; Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
  0.657
OAA18026.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
  
     0.635
OAA19881.1
Site-specific recombinase XerD; PFAM: Phage integrase family; IMG reference gene:2639021292_SP; Belongs to the 'phage' integrase family.
  
     0.579
OAA23602.1
Hypothetical protein.
       0.563
OAA23600.1
Hypothetical protein.
     
 0.533
OAA23599.1
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
     
 0.528
OAA23594.1
Hypothetical protein.
       0.527
OAA23595.1
Hypothetical protein.
       0.527
OAA23596.1
Hypothetical protein.
       0.527
Your Current Organism:
Frankia sp. EI5c
NCBI taxonomy Id: 683316
Other names: F. sp. EI5c
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.