STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAA19071.1Conserved repeat protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain. (1034 aa)    
Predicted Functional Partners:
OAA28260.1
Hypothetical protein.
 
 
 0.804
OAA27756.1
FHA domain-containing protein; PFAM: FHA domain.
 
 
 0.802
OAA22272.1
Hypothetical protein.
  
  
  0.791
OAA20265.1
Hypothetical protein.
 
 
 0.785
OAA19560.1
Hypothetical protein.
 
     0.753
OAA27050.1
PFAM: Trypsin-like peptidase domain; Colicin V production protein.
  
 
 0.742
OAA24169.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin-like peptidase domain; PDZ domain.
  
 
 0.742
OAA24189.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin-like peptidase domain; PDZ domain.
  
 
 0.742
OAA20263.1
Putative serine protease PepD; PFAM: Trypsin-like peptidase domain; PDZ domain.
  
 
 0.742
OAA29567.1
PFAM: Right handed beta helix region.
  
 
 0.712
Your Current Organism:
Frankia sp. EI5c
NCBI taxonomy Id: 683316
Other names: F. sp. EI5c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.