STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lse_0970Minor teichoic acids biosynthesis protein GgaB family protein. (623 aa)    
Predicted Functional Partners:
rmlA
Glucose-1-phosphate thymidylyltransferase.
  
  
 0.834
lse_0980
Glycosyl transferase family protein.
 
    0.813
lse_0975
Glycosyl transferase, group 2 family protein.
 
  
 0.764
lse_0969
Integral membrane protein.
 
  
 0.757
lse_1634
Cell wall surface anchor family protein, putative.
  
     0.751
lse_0546
Cell wall surface anchor (LPXTG motif) family protein.
  
  
 0.743
lse_1332
Putative secreted protein.
  
     0.742
lse_2696
Conserved hypothetical protein.
  
    0.737
lse_2368
Leucine rich repeat domain protein.
  
     0.727
lse_2370
Leucine rich repeat domain protein.
  
     0.727
Your Current Organism:
Listeria seeligeri
NCBI taxonomy Id: 683837
Other names: L. seeligeri serovar 1/2b str. SLCC3954, Listeria seeligeri serovar 1/2b str. SLCC3954, Listeria seeligeri serovar 1/2b strain SLCC3954
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.