STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lse_1616Hypothetical protein. (85 aa)    
Predicted Functional Partners:
lse_1614
Hypothetical protein.
       0.773
lse_1615
Hypothetical protein.
       0.773
lse_1617
Hypothetical protein.
       0.452
lse_1618
Site-specific recombinase, phage integrase family.
       0.443
lse_1619
LuxR-type HTH domain protein.
       0.443
lse_1620
Hypothetical protein.
       0.419
lse_1621
Hypothetical protein.
       0.419
lse_1622
Conserved hypothetical protein.
       0.419
lse_1623
Restriction endonuclease specificity (S) protein, putative.
       0.419
lse_1624
Hypothetical protein.
       0.419
Your Current Organism:
Listeria seeligeri
NCBI taxonomy Id: 683837
Other names: L. seeligeri serovar 1/2b str. SLCC3954, Listeria seeligeri serovar 1/2b str. SLCC3954, Listeria seeligeri serovar 1/2b strain SLCC3954
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.