A0A1E3NV68 protein (Wickerhamomyces anomalus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1E3NV68

Uncharacterized protein. (536 aa)

Predicted Functional Partners:

A0A1E3NUH6

0.999

A0A1E3NYA8

0.999

A0A1E3P262

0.999

A0A1E3P9L3

0.999

A0A1E3PBC8

0.999

A0A1E3P037

0.955

A0A1E3P5U2

0.943

A0A1E3PAT4

0.909

A0A1E3NYL1

0.907

A0A1E3P8I3

0.899

Your Current Organism:

Wickerhamomyces anomalus

NCBI taxonomy Id: 683960
Other names: Pichia anomala NRRL Y-366-8, W. anomalus NRRL Y-366-8, Wickerhamomyces anomalus NRRL Y-366-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3NUH6	A0A1E3NV68	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1E3NUH6	A0A1E3NYA8	Uncharacterized protein.	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.	0.999
A0A1E3NUH6	A0A1E3NYL1	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.921
A0A1E3NUH6	A0A1E3P037	Uncharacterized protein.	SRP54 domain-containing protein.	0.950
A0A1E3NUH6	A0A1E3P262	Uncharacterized protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.999
A0A1E3NUH6	A0A1E3P5U2	Uncharacterized protein.	Uncharacterized protein.	0.927
A0A1E3NUH6	A0A1E3P8I3	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.891
A0A1E3NUH6	A0A1E3P9L3	Uncharacterized protein.	SRP9-21 domain-containing protein.	0.999
A0A1E3NUH6	A0A1E3PAT4	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A1E3NUH6	A0A1E3PBC8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1E3NV68	A0A1E3NUH6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1E3NV68	A0A1E3NYA8	Uncharacterized protein.	Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.	0.999
A0A1E3NV68	A0A1E3NYL1	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.907
A0A1E3NV68	A0A1E3P037	Uncharacterized protein.	SRP54 domain-containing protein.	0.955
A0A1E3NV68	A0A1E3P262	Uncharacterized protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.999
A0A1E3NV68	A0A1E3P5U2	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A1E3NV68	A0A1E3P8I3	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.899
A0A1E3NV68	A0A1E3P9L3	Uncharacterized protein.	SRP9-21 domain-containing protein.	0.999
A0A1E3NV68	A0A1E3PAT4	Uncharacterized protein.	Uncharacterized protein.	0.909
A0A1E3NV68	A0A1E3PBC8	Uncharacterized protein.	Uncharacterized protein.	0.999