STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN09001.1TonB-linked outer membrane protein, SusC/RagA family. (977 aa)    
Predicted Functional Partners:
SFN08975.1
Starch-binding associating with outer membrane.
 
   0.974
SFN08950.1
Hypothetical protein.
 
     0.909
SFN09026.1
Hypothetical protein.
 
     0.828
SFM98244.1
Starch-binding associating with outer membrane.
 
     0.719
SFM62950.1
SusD family protein.
  
 
   0.656
SFN08835.1
Carboxylesterase family protein.
 
     0.656
SFM98222.1
SusE outer membrane protein.
 
     0.645
SFN08900.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
 
     0.629
SFN08926.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
      0.619
SFM59005.1
SusD family protein.
  
 
   0.603
Your Current Organism:
Algoriella xinjiangensis
NCBI taxonomy Id: 684065
Other names: A. xinjiangensis, Algoriella xinjiangensis Yang et al. 2016, CGMCC 1.10229, Flavobacteriaceae bacterium XJ109, JCM 16590, strain XJ109
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.