STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR66317.1Iron-regulated ABC transporter permease protein SufD. (404 aa)    
Predicted Functional Partners:
SDR66297.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SDS28212.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.941
SDS28239.1
Nitrogen fixation protein NifU.
 
  
 0.936
SDR66287.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.920
SDR66327.1
Iron-regulated ABC transporter membrane component SufB.
 
   
0.917
SDR66309.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
 
     0.850
SDS34788.1
Cysteine desulfurase family protein, VC1184 subfamily.
 
 
 0.832
SDR66336.1
Cytochrome c oxidase assembly protein subunit 15.
       0.606
SDS09766.1
Fe-S cluster assembly iron-binding protein IscA.
  
 
 0.545
SDS53736.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
 
 0.545
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.