STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR74154.1Predicted arabinose efflux permease, MFS family. (438 aa)    
Predicted Functional Partners:
SDR74165.1
Helix-turn-helix domain-containing protein.
 
     0.875
SDR74130.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.642
SDS06371.1
Transmembrane secretion effector.
  
     0.608
SDR74896.1
Peptide/nickel transport system substrate-binding protein.
  
     0.559
SDR74107.1
Alpha/beta hydrolase family protein.
       0.548
SDR65812.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
  
     0.477
SDS18060.1
Helix-turn-helix domain-containing protein.
 
     0.471
SDR74198.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
       0.463
SDR74878.1
Peptide/nickel transport system permease protein.
  
     0.439
SDR74946.1
Peptide/nickel transport system substrate-binding protein.
  
     0.408
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.