STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR98228.1DNA-binding transcriptional regulator, IclR family; Manually curated. (260 aa)    
Predicted Functional Partners:
SDR66558.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.948
SDR98626.1
DNA-binding transcriptional regulator, IclR family.
  
     0.774
SDS24524.1
DNA-binding transcriptional regulator, IclR family.
  
     0.772
SDR98151.1
Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds.
 
  
  0.748
SDR98098.1
4-hydroxy 2-oxovalerate aldolase; Catalyzes the retro-aldol cleavage of 4-hydroxy-2- oxopentanoate to pyruvate and acetaldehyde. Is involved in the meta- cleavage pathway for the degradation of aromatic compounds. Belongs to the 4-hydroxy-2-oxovalerate aldolase family.
 
  
  0.734
SDR77123.1
DNA-binding transcriptional regulator, IclR family.
  
     0.701
SDR98261.1
PhoH-like protein.
       0.556
SDR98056.1
2-oxo-3-hexenedioate decarboxylase.
  
    0.555
SDR98189.1
2-keto-4-pentenoate hydratase.
  
    0.555
SDR97966.1
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
       0.551
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.