STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS15749.1DNA-binding transcriptional regulator, FadR family. (237 aa)    
Predicted Functional Partners:
SDS15704.1
3-hydroxyisobutyrate dehydrogenase.
       0.773
SDS08725.1
DNA-binding transcriptional regulator, FadR family.
  
     0.767
SDS03038.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.752
SDR84855.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.738
SDS39414.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.710
SDS36537.1
DNA-binding transcriptional regulator, GntR family.
  
  
 0.676
SDS15595.1
Transketolase subunit B.
 
     0.606
SDS15637.1
Transketolase.
       0.549
SDS15676.1
Sugar phosphate permease.
       0.539
SDS15429.1
DNA-binding transcriptional regulator, GntR family.
 
  
0.470
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.