STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS17809.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
SDS17765.1
Cupin domain-containing protein.
       0.649
SDS07215.1
Hypothetical protein.
 
     0.596
SDS19702.1
Predicted transcriptional regulator, ArsR family.
 
    0.535
SDS36391.1
Mannose-6-phosphate isomerase, cupin superfamily.
  
  0.512
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.471
SDS17858.1
Hypothetical protein.
       0.460
SDS15845.1
Lipase maturation factor.
  
     0.452
SDS09862.1
Hypothetical protein.
  
    0.416
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.