STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS55165.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SDS11999.1
Putative copper resistance protein D.
 
  
 0.773
SDR80257.1
Uncharacterized protein YcnI.
  
  
 0.750
SDS27974.1
Integral membrane protein.
   
    0.674
SDR67589.1
Protein of unknown function.
  
  
  0.578
SDS27930.1
Cytochrome oxidase assembly protein ShyY1.
  
     0.573
SDS52331.1
Hypothetical protein.
  
     0.545
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
    0.543
SDS53894.1
Cytochrome c oxidase subunit IV.
  
     0.475
SDR69114.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.455
SDS32139.1
Protein-disulfide isomerase.
  
     0.433
Your Current Organism:
Agrococcus carbonis
NCBI taxonomy Id: 684552
Other names: A. carbonis, Agrococcus carbonis Dhanjal et al. 2011, Agrococcus sp. G4, DSM 22965, MTCC 10213, strain G4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.