STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMH79897.1Putative quinone oxidoreductase, YhdH/YhfP family. (331 aa)    
Predicted Functional Partners:
folE
GTP cyclohydrolase I.
    
  0.842
EMH79896.1
Zinc finger protein, CHCC type.
       0.773
EMH79898.1
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.773
EMH80817.1
Methylmalonate-semialdehyde dehydrogenase (acylating).
   
  0.736
EMH80351.1
acyl-CoA synthetase/AMP-acid ligase.
   
 
  0.706
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
  0.706
EMH80696.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
 0.637
EMH79891.1
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED.
  
    0.559
EMH79892.1
Hypothetical protein.
       0.558
EMH79893.1
Hypothetical protein.
       0.558
Your Current Organism:
alpha proteobacterium HIMB114
NCBI taxonomy Id: 684719
Other names: a. proteobacterium HIMB114
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