STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMH80263.1Type II secretory pathway, component PulF. (427 aa)    
Predicted Functional Partners:
EMH80264.1
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 0.999
EMH80265.1
Type II secretory pathway, component HofQ; Belongs to the bacterial secretin family.
 
 
 
 0.971
EMH80267.1
Competence protein A,Fimbrial assembly protein (PilN).
 
 
 
 0.925
EMH80268.1
Pilus retraction ATPase PilT.
  
 0.921
EMH80243.1
Prepilin signal peptidase PulO-like peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.899
EMH80266.1
LysM domain-containing protein.
       0.693
EMH80069.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
  
 0.646
EMH80256.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.627
EMH80248.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein; Overlaps another CDS with the same product name.
  
  
 0.617
EMH80257.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.576
Your Current Organism:
alpha proteobacterium HIMB114
NCBI taxonomy Id: 684719
Other names: a. proteobacterium HIMB114
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