STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EMH80309.1Hypothetical protein. (778 aa)    
Predicted Functional Partners:
EMH80307.1
Putative permease; Overlaps another CDS with the same product name.
 
  
 0.935
EMH80308.1
Putative permease; Overlaps another CDS with the same product name.
 
  
 0.930
EMH80312.1
Dimethyladenosine transferase (rRNA methylation); Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
  
    0.827
EMH80311.1
Pyridoxal phosphate biosynthesis protein; Belongs to the PdxA family.
  
    0.783
EMH80310.1
Hypothetical protein.
       0.773
EMH79666.1
ABC-type (unclassified) transport system, ABC protein.
  
 
 0.630
pepA
Leucyl aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
    0.615
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.612
bamD
Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.518
EMH80197.1
Beta-barrel assembly machine subunit BamA.
  
  
 0.490
Your Current Organism:
alpha proteobacterium HIMB114
NCBI taxonomy Id: 684719
Other names: a. proteobacterium HIMB114
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