Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DC74_408Hypothetical protein. (235 aa)    
Predicted Functional Partners:
DC74_409
Hypothetical protein.
 
     0.661
DC74_5158
Hypothetical protein.
  
     0.660
DC74_406
YCII-related protein.
       0.601
rpoE_2
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family.
       0.601
DC74_2220
Hypothetical protein.
  
     0.575
DC74_865
Hypothetical protein.
  
     0.552
DC74_739
TetR family transcriptional regulator.
  
   
 0.525
DC74_2434
TetR family transcriptional regulator.
  
   
 0.519
DC74_6689
TetR family transcriptional regulator.
  
   
 0.413
Your Current Organism:
Streptomyces albulus
NCBI taxonomy Id: 68570
Other names: ATCC 12757, BCRC 11819, CBS 711.72, CCRC 11819, CCRC:11819, DSM 40492, IFO 13410, ISP 5492, JCM 4718, KCTC 9668, NBRC 13410, NRRL B-5386, NRRL-ISP 5492, S. albulus, strain IMC S-0802
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