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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DC74_4233Hypothetical protein. (343 aa)    
Predicted Functional Partners:
DC74_4234
Hypothetical protein.
 
   
 0.956
DC74_2262
L-alanine dehydrogenase.
  
  
 0.809
DC74_4235
Hypothetical protein.
       0.721
DC74_5051
Cell wall lytic activity.
 
   
 0.696
DC74_4991
Hypothetical protein.
 
    0.695
DC74_3461
Secreted protein.
  
     0.679
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.664
rpsR1
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
     
 0.645
ssb2
Single-stranded DNA-binding protein.
       0.641
DC74_5332
ATP-dependent DNA helicase.
  
     0.638
Your Current Organism:
Streptomyces albulus
NCBI taxonomy Id: 68570
Other names: ATCC 12757, BCRC 11819, CBS 711.72, CCRC 11819, CCRC:11819, DSM 40492, IFO 13410, ISP 5492, JCM 4718, KCTC 9668, NBRC 13410, NRRL B-5386, NRRL-ISP 5492, S. albulus, strain IMC S-0802
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