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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DC74_4411Cobalamin biosynthesis protein. (418 aa)    
Predicted Functional Partners:
rpmF2
50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
 
    0.823
DC74_3044
Putative metal transport ABC transporter substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.741
rpsN-2
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.659
DC74_4410
Hypothetical protein.
 
     0.647
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.589
DC74_2554
Hypothetical protein.
  
  
 0.584
DC74_3045
Manganese/zinc transport system ABC transporter ATP-binding protein.
     
 0.540
DC74_4409
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.535
rpmB2
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.513
rpmG1
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
 
  
 0.507
Your Current Organism:
Streptomyces albulus
NCBI taxonomy Id: 68570
Other names: ATCC 12757, BCRC 11819, CBS 711.72, CCRC 11819, CCRC:11819, DSM 40492, IFO 13410, ISP 5492, JCM 4718, KCTC 9668, NBRC 13410, NRRL B-5386, NRRL-ISP 5492, S. albulus, strain IMC S-0802
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