STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DC74_445Ornithine cyclodeaminase. (361 aa)    
Predicted Functional Partners:
cysK_3
Putative cysteine synthase.
 
  
 0.919
DC74_444
SyrP-like protein.
 
    0.859
DC74_443
Non-ribosomal peptide synthetase.
 
     0.782
cysK_1
Putative cysteine synthase.
 
  
 0.779
cysK_2
Putative cysteine synthase.
 
  
 0.764
DC74_442
Non-ribosomal peptide synthetase.
 
   
 0.666
DC74_1398
Cytochrome P450.
      
 0.618
DC74_1404
Cytochrome P450.
      
 0.618
DC74_3059
Cytochrome P450 monooxygenase.
      
 0.618
DC74_7919
Cytochrome P450.
      
 0.618
Your Current Organism:
Streptomyces albulus
NCBI taxonomy Id: 68570
Other names: ATCC 12757, BCRC 11819, CBS 711.72, CCRC 11819, CCRC:11819, DSM 40492, IFO 13410, ISP 5492, JCM 4718, KCTC 9668, NBRC 13410, NRRL B-5386, NRRL-ISP 5492, S. albulus, strain IMC S-0802
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