Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DC74_2774 | DC74_4488 | DC74_2774 | DC74_4488 | Ribonuclease R. | Hypothetical protein. | 0.731 |
DC74_2774 | DC74_5236 | DC74_2774 | DC74_5236 | Ribonuclease R. | Helicase. | 0.504 |
DC74_2774 | rph | DC74_2774 | DC74_3338 | Ribonuclease R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.970 |
DC74_4486 | DC74_4488 | DC74_4486 | DC74_4488 | Crp/Fnr family transcriptional regulator. | Hypothetical protein. | 0.658 |
DC74_4486 | DC74_4489 | DC74_4486 | DC74_4489 | Crp/Fnr family transcriptional regulator. | Putative serine protease. | 0.630 |
DC74_4486 | nth | DC74_4486 | DC74_4487 | Crp/Fnr family transcriptional regulator. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.737 |
DC74_4488 | DC74_2774 | DC74_4488 | DC74_2774 | Hypothetical protein. | Ribonuclease R. | 0.731 |
DC74_4488 | DC74_4486 | DC74_4488 | DC74_4486 | Hypothetical protein. | Crp/Fnr family transcriptional regulator. | 0.658 |
DC74_4488 | DC74_4489 | DC74_4488 | DC74_4489 | Hypothetical protein. | Putative serine protease. | 0.890 |
DC74_4488 | DC74_5236 | DC74_4488 | DC74_5236 | Hypothetical protein. | Helicase. | 0.445 |
DC74_4488 | nnrE | DC74_4488 | DC74_3785 | Hypothetical protein. | Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...] | 0.877 |
DC74_4488 | nth | DC74_4488 | DC74_4487 | Hypothetical protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.809 |
DC74_4488 | rph | DC74_4488 | DC74_3338 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.618 |
DC74_4489 | DC74_4486 | DC74_4489 | DC74_4486 | Putative serine protease. | Crp/Fnr family transcriptional regulator. | 0.630 |
DC74_4489 | DC74_4488 | DC74_4489 | DC74_4488 | Putative serine protease. | Hypothetical protein. | 0.890 |
DC74_4489 | nth | DC74_4489 | DC74_4487 | Putative serine protease. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.808 |
DC74_5236 | DC74_2774 | DC74_5236 | DC74_2774 | Helicase. | Ribonuclease R. | 0.504 |
DC74_5236 | DC74_4488 | DC74_5236 | DC74_4488 | Helicase. | Hypothetical protein. | 0.445 |
DC74_5236 | nnrE | DC74_5236 | DC74_3785 | Helicase. | Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...] | 0.857 |
DC74_5236 | rph | DC74_5236 | DC74_3338 | Helicase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.526 |
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