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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DC74_504NAD-dependent epimerase/dehydratase. (332 aa)    
Predicted Functional Partners:
DC74_503
Hypothetical protein.
       0.563
DC74_4387
3-demethylubiquinone-9 3-methyltransferase.
  
    0.549
arcA
Arginine deiminase.
   
    0.545
DC74_2681
Hypothetical protein.
  
    0.475
DC74_1959
Secreted protein.
   
    0.459
DC74_1763
F420-dependent enzyme.
  
    0.442
DC74_2501
Hypothetical protein.
  
    0.442
DC74_3263
dTDP-4-dehydrorhamnose reductase.
   
    0.442
DC74_6477
NAD-dependent epimerase/dehydratase.
   
    0.442
DC74_6930
Hypothetical protein.
  
    0.442
Your Current Organism:
Streptomyces albulus
NCBI taxonomy Id: 68570
Other names: ATCC 12757, BCRC 11819, CBS 711.72, CCRC 11819, CCRC:11819, DSM 40492, IFO 13410, ISP 5492, JCM 4718, KCTC 9668, NBRC 13410, NRRL B-5386, NRRL-ISP 5492, S. albulus, strain IMC S-0802
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