Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DC74_2852 | DC74_4004 | DC74_2852 | DC74_4004 | Hypothetical protein. | ATP-dependent helicase. | 0.592 |
DC74_2852 | DC74_7838 | DC74_2852 | DC74_7838 | Hypothetical protein. | Hypothetical protein. | 0.669 |
DC74_2852 | DC74_8150 | DC74_2852 | DC74_8150 | Hypothetical protein. | WD repeat-containing protein. | 0.830 |
DC74_2852 | rplC | DC74_2852 | DC74_3824 | Hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.996 |
DC74_2852 | rplM | DC74_2852 | DC74_3792 | Hypothetical protein. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.995 |
DC74_2852 | rpsA | DC74_2852 | DC74_2463 | Hypothetical protein. | 30S ribosomal protein S1. | 0.854 |
DC74_2852 | rpsE | DC74_2852 | DC74_3807 | Hypothetical protein. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
DC74_2852 | rpsK | DC74_2852 | DC74_3798 | Hypothetical protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.994 |
DC74_4004 | DC74_2852 | DC74_4004 | DC74_2852 | ATP-dependent helicase. | Hypothetical protein. | 0.592 |
DC74_4004 | DC74_7838 | DC74_4004 | DC74_7838 | ATP-dependent helicase. | Hypothetical protein. | 0.723 |
DC74_4004 | DC74_8150 | DC74_4004 | DC74_8150 | ATP-dependent helicase. | WD repeat-containing protein. | 0.476 |
DC74_4004 | rpsA | DC74_4004 | DC74_2463 | ATP-dependent helicase. | 30S ribosomal protein S1. | 0.936 |
DC74_4004 | rpsE | DC74_4004 | DC74_3807 | ATP-dependent helicase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.772 |
DC74_4004 | rpsK | DC74_4004 | DC74_3798 | ATP-dependent helicase. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.892 |
DC74_7838 | DC74_2852 | DC74_7838 | DC74_2852 | Hypothetical protein. | Hypothetical protein. | 0.669 |
DC74_7838 | DC74_4004 | DC74_7838 | DC74_4004 | Hypothetical protein. | ATP-dependent helicase. | 0.723 |
DC74_7838 | DC74_8150 | DC74_7838 | DC74_8150 | Hypothetical protein. | WD repeat-containing protein. | 0.771 |
DC74_7838 | nnrE | DC74_7838 | DC74_3785 | Hypothetical protein. | Hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epi [...] | 0.776 |
DC74_7838 | pnp | DC74_7838 | DC74_5820 | Hypothetical protein. | Guanosine pentaphosphate synthetase/polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.744 |
DC74_7838 | rplC | DC74_7838 | DC74_3824 | Hypothetical protein. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.697 |
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