Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIC28046.1PFAM: Protein of unknown function DUF58. (318 aa)    
Predicted Functional Partners:
EIC28047.1
Transglutaminase-like enzyme, predicted cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
  
 0.980
EIC28045.1
PFAM: ATPase family associated with various cellular activities (AAA).
 
  
 0.948
EIC28137.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.753
EIC30349.1
TIGRFAM: FimV C-terminal domain; FimV N-terminal domain.
 
     0.740
EIC29391.1
Tfp pilus assembly protein PilZ; PFAM: PilZ domain.
  
     0.737
EIC30385.1
PFAM: Fimbrial assembly protein (PilN).
  
     0.706
EIC29152.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain.
  
     0.694
EIC30384.1
PFAM: Pilus assembly protein, PilO.
  
     0.686
EIC30386.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
     0.686
EIC30383.1
PFAM: Pilus assembly protein, PilP.
  
     0.685
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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