Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIC28466.1PFAM: Mating pair stabilisation protein TraN. (929 aa)    
Predicted Functional Partners:
EIC28465.1
PFAM: TraU protein.
 
   
 0.965
EIC28464.1
PFAM: Type-F conjugative transfer system pilin assembly protein.
 
   
 0.955
EIC28463.1
PFAM: Peptidase S26; TIGRFAM: signal peptidase I, bacterial type; Belongs to the peptidase S26 family.
 
     0.925
EIC28461.1
PFAM: F pilus assembly Type-IV secretion system for plasmid transfer; TIGRFAM: type-IV secretion system protein TraC.
 
   
 0.923
EIC28457.1
Disulfide bond isomerase protein; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.865
EIC28441.1
PFAM: Conjugative relaxosome accessory transposon protein.
 
   
 0.860
EIC28456.1
PFAM: Bacterial conjugation TrbI-like protein.
 
     0.857
EIC31475.1
PFAM: Prokaryotic N-terminal methylation motif; Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; overlaps another CDS with the same product name.
  
 0.843
EIC28442.1
TIGRFAM: TraF-like protein.
 
   
 0.810
EIC28447.1
Conjugative coupling factor TraD, SXT/TOL subfamily; PFAM: Type IV secretion-system coupling protein DNA-binding domain; TIGRFAM: conjugative coupling factor TraD, SXT/TOL subfamily.
 
     0.798
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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