Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIC28987.1PFAM: F5/8 type C domain. (157 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.905
EIC29071.1
Hypothetical protein.
    
 0.889
EIC27989.1
PFAM: von Willebrand factor type A domain; Tetratricopeptide repeat.
    
 0.817
EIC28812.1
Hypothetical protein; PFAM: Plant specific mitochondrial import receptor subunit TOM20.
    
 0.817
EIC29433.1
Hypothetical protein.
    
 0.817
EIC29435.1
Hypothetical protein.
    
 0.817
EIC28780.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
    
  0.612
EIC29938.1
Hypothetical protein.
    
  0.612
EIC28986.1
Hypothetical protein.
       0.596
EIC29136.1
Hypothetical protein.
    
  0.581
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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