Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIC29287.1PFAM: Protein of unknown function (DUF820). (110 aa)    
Predicted Functional Partners:
EIC30274.1
PFAM: Protein of unknown function (DUF820).
  
     0.743
EIC27944.1
PFAM: Protein of unknown function (DUF820).
  
     0.701
EIC28994.1
PFAM: Protein of unknown function (DUF820).
  
     0.696
EIC30587.1
PFAM: Protein of unknown function (DUF433).
  
     0.615
EIC30902.1
Putative nucleic acid-binding protein; Contains PIN domain; PFAM: Domain of unknown function (DUF3368).
  
     0.554
EIC29286.1
PFAM: Protein of unknown function (DUF1348).
       0.535
EIC30229.1
Putative nucleic acid-binding protein; Contains PIN domain; manually curated.
  
     0.522
EIC31216.1
PFAM: Protein of unknown function (DUF820).
  
     0.495
EIC31505.1
PFAM: Protein of unknown function (DUF820).
  
     0.470
cas2-2
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
  
     0.469
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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