STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIC29313.1PFAM: CRISPR-associated protein (Cas_Csy3); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy3. (343 aa)    
Predicted Functional Partners:
EIC29311.1
PFAM: CRISPR-associated protein (Cas_Csy1); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy1.
 
 
 
 0.996
EIC29314.1
PFAM: CRISPR-associated protein (Cas_Csy4); TIGRFAM: CRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST.
 
   
 0.961
EIC29312.1
PFAM: CRISPR-associated protein (Cas_Csy2); TIGRFAM: CRISPR type I-F/YPEST-associated protein Csy2.
 
   
 0.955
EIC27887.1
Hypothetical protein.
   
   0.930
EIC29308.1
TIGRFAM: CRISPR-associated helicase Cas3, subtype I-F/YPEST.
 
   
 0.887
cas1
CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
   
 0.793
EIC27886.1
PFAM: Mu transposase, C-terminal; Integrase core domain.
    
   0.573
EIC27895.1
Hypothetical protein.
    
   0.573
EIC28410.1
PFAM: Transposase.
    
   0.573
EIC29140.1
Hypothetical protein.
    
   0.573
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.