STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIC30530.1PFAM: GumN protein. (291 aa)    
Predicted Functional Partners:
EIC30529.1
Hypothetical protein; PFAM: Cupin domain; contains double-stranded beta-helix domain.
       0.773
EIC28272.1
PFAM: REJ domain.
  
     0.465
EIC29050.1
PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
     0.446
EIC29606.1
PFAM: RHS Repeat; TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies); manually curated.
  
     0.435
EIC30164.1
TIGRFAM: RHS repeat-associated core domain; YD repeat (two copies).
  
     0.428
EIC28886.1
Diaminopimelate decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
  
     0.405
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.