Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIC30888.1PFAM: Di-haem cytochrome c peroxidase. (713 aa)    
Predicted Functional Partners:
EIC31594.1
PFAM: Di-haem cytochrome c peroxidase.
  
     0.723
EIC30666.1
Hypothetical protein.
  
     0.721
EIC31486.1
PFAM: Protein of unknown function (DUF3570).
  
     0.713
EIC30889.1
Hypothetical protein.
       0.561
EIC28388.1
Hypothetical protein.
  
     0.535
EIC29960.1
PFAM: Cytochrome c; Di-haem cytochrome c peroxidase.
  
     0.528
EIC28565.1
PFAM: 56kDa selenium binding protein (SBP56).
 
 
   0.496
EIC31281.1
PFAM: Protein of unknown function (DUF1597).
  
     0.476
EIC29266.1
TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.472
EIC28911.1
Hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat.
 
 
 0.465
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
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