Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIC31444.1Negative regulator of sigma E activity; PFAM: MucB/RseB family; overlaps another CDS with the same product name. (326 aa)    
Predicted Functional Partners:
EIC31445.1
Negative regulator of sigma E activity; PFAM: Anti sigma-E protein RseA, N-terminal domain; overlaps another CDS with the same product name.
  
 
 0.995
EIC31446.1
RNA polymerase sigma factor RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.956
EIC31443.1
Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family; Belongs to the peptidase S1C family.
  
  
 0.588
EIC29340.1
2''-5'' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
  
     0.537
EIC28274.1
PFAM: haemagglutination activity domain; Filamentous haemagglutinin family outer membrane protein; TIGRFAM: filamentous haemagglutinin family N-terminal domain.
  
     0.524
EIC31468.1
Methylase involved in ubiquinone/menaquinone biosynthesis; PFAM: Methyltransferase domain.
  
     0.522
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
    0.520
EIC28278.1
Hypothetical protein.
  
     0.510
EIC28938.1
Putative membrane protein, required for colicin V production; PFAM: Colicin V production protein.
  
     0.504
EIC28590.1
PFAM: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Belongs to the Rsd/AlgQ family.
  
   
 0.480
Your Current Organism:
Methylomicrobium album
NCBI taxonomy Id: 686340
Other names: M. album BG8, Methylomicrobium album BG8, Methylomicrobium album str. BG8, Methylomicrobium album strain BG8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.