STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC52754.1Response regulator receiver domain-containing protein. (130 aa)    
Predicted Functional Partners:
SDD77081.1
GAF domain-containing protein.
 
  
 0.860
SDD10638.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
    
 0.798
SDD55223.1
PAS domain S-box-containing protein.
    
 0.798
SDD54069.1
PAS domain S-box-containing protein.
    
 0.789
SDC53601.1
Response regulator receiver domain-containing protein.
  
  
  0.750
SDC70091.1
PAS domain S-box-containing protein.
    
 0.748
SDD29985.1
PAS domain S-box-containing protein.
    
 0.748
SDD11055.1
PAS domain S-box-containing protein.
    
 0.723
SDD11770.1
PAS domain S-box-containing protein.
    
 0.723
SDD16513.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  
 0.602
Your Current Organism:
Algoriphagus faecimaris
NCBI taxonomy Id: 686796
Other names: A. faecimaris, Algoriphagus faecimaris Li et al. 2011, Algoriphagus sp. LYX05, DSM 23095, JCM 16561, LMG 25474, LMG:25474, strain LYX05
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