STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC69587.1Von Willebrand factor type A domain-containing protein. (337 aa)    
Predicted Functional Partners:
SDC71530.1
Magnesium chelatase subunit I.
  
 0.899
SDC51677.1
Catechol 2,3-dioxygenase.
  
     0.732
SDD01314.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
  0.626
SDC88719.1
Hypothetical protein.
  
     0.615
SDC69560.1
Transposase.
       0.559
SDC51634.1
Sugar phosphate isomerase/epimerase.
  
     0.552
SDC51663.1
L-alanine-DL-glutamate epimerase.
  
     0.471
SDC69599.1
Delta-60 repeat domain-containing protein/Por secretion system C-terminal sorting domain-containing protein.
    
  0.464
SDC50701.1
N-formylglutamate amidohydrolase.
  
     0.423
SDC88344.1
Hypothetical protein.
  
    0.420
Your Current Organism:
Algoriphagus faecimaris
NCBI taxonomy Id: 686796
Other names: A. faecimaris, Algoriphagus faecimaris Li et al. 2011, Algoriphagus sp. LYX05, DSM 23095, JCM 16561, LMG 25474, LMG:25474, strain LYX05
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